{"id":901,"date":"2016-12-16T09:52:41","date_gmt":"2016-12-16T00:52:41","guid":{"rendered":"https:\/\/www.ag.kagawa-u.ac.jp\/charlesy\/?p=901"},"modified":"2017-01-11T18:08:11","modified_gmt":"2017-01-11T09:08:11","slug":"gromacs%e5%bd%a2%e5%bc%8f%e3%81%aetopology%e3%83%95%e3%82%a1%e3%82%a4%e3%83%ab%e3%81%aeamber%e5%bd%a2%e5%bc%8f%e3%81%b8%e3%81%ae%e5%a4%89%e6%8f%9b","status":"publish","type":"post","link":"https:\/\/www.ag.kagawa-u.ac.jp\/charlesy\/2016\/12\/16\/gromacs%e5%bd%a2%e5%bc%8f%e3%81%aetopology%e3%83%95%e3%82%a1%e3%82%a4%e3%83%ab%e3%81%aeamber%e5%bd%a2%e5%bc%8f%e3%81%b8%e3%81%ae%e5%a4%89%e6%8f%9b\/","title":{"rendered":"GROMACS\u5f62\u5f0f\u306eTopology\u30d5\u30a1\u30a4\u30eb\u306eAMBER\u5f62\u5f0f\u3078\u306e\u5909\u63db"},"content":{"rendered":"<p>\u74b0\u5883: macOS Sierra 10.12.1, Gromacs 2016.1, AmberTools 16.<br \/>\n\u53c2\u7167: <a href=\"https:\/\/parmed.github.io\/ParmEd\/html\/parmed.html\">ParmEd 2.5.0 documentation \u00bb Using parmed<\/a><\/p>\n<pre class=\"command-line\"><code class=\"language-bash\" data-line=\"\">$ parmed\n&gt; gromber topol.top\n&gt; outparm amber.prmtop\n&gt; quit\n<\/code><\/pre>\n<p>\u5ea7\u6a19\u30d5\u30a1\u30a4\u30eb\u3082\u5909\u63db\u3057\u305f\u3044\u5834\u5408\u306f\uff0c<\/p>\n<pre class=\"command-line\"><code class=\"language-bash\" data-line=\"\">$ parmed\n&gt; gromber topol.top conf.gro\n&gt; outparm amber.prmtop amber.inpcrd\n&gt; quit\n<\/code><\/pre>\n<p>(\u4e86)<\/p>\n","protected":false},"excerpt":{"rendered":"<p>\u74b0\u5883: macOS Sierra 10.12.1, Grom &#8230;<\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"om_disable_all_campaigns":false,"_uag_custom_page_level_css":"","_monsterinsights_skip_tracking":false,"_monsterinsights_sitenote_active":false,"_monsterinsights_sitenote_note":"","_monsterinsights_sitenote_category":0,"_uf_show_specific_survey":0,"_uf_disable_surveys":false,"_locale":"","_original_post":"","footnotes":""},"categories":[5],"tags":[],"class_list":["post-901","post","type-post","status-publish","format-standard","hentry","category-5","ja"],"aioseo_notices":[],"uagb_featured_image_src":{"full":false,"thumbnail":false,"medium":false,"medium_large":false,"large":false,"1536x1536":false,"2048x2048":false,"onepress-blog-small":false,"onepress-small":false,"onepress-medium":false},"uagb_author_info":{"display_name":"RCY","author_link":"https:\/\/www.ag.kagawa-u.ac.jp\/charlesy\/author\/charlesy\/"},"uagb_comment_info":0,"uagb_excerpt":"\u74b0\u5883: macOS Sierra 10.12.1, Grom ...","_links":{"self":[{"href":"https:\/\/www.ag.kagawa-u.ac.jp\/charlesy\/wp-json\/wp\/v2\/posts\/901","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/www.ag.kagawa-u.ac.jp\/charlesy\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.ag.kagawa-u.ac.jp\/charlesy\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.ag.kagawa-u.ac.jp\/charlesy\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.ag.kagawa-u.ac.jp\/charlesy\/wp-json\/wp\/v2\/comments?post=901"}],"version-history":[{"count":4,"href":"https:\/\/www.ag.kagawa-u.ac.jp\/charlesy\/wp-json\/wp\/v2\/posts\/901\/revisions"}],"predecessor-version":[{"id":966,"href":"https:\/\/www.ag.kagawa-u.ac.jp\/charlesy\/wp-json\/wp\/v2\/posts\/901\/revisions\/966"}],"wp:attachment":[{"href":"https:\/\/www.ag.kagawa-u.ac.jp\/charlesy\/wp-json\/wp\/v2\/media?parent=901"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.ag.kagawa-u.ac.jp\/charlesy\/wp-json\/wp\/v2\/categories?post=901"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.ag.kagawa-u.ac.jp\/charlesy\/wp-json\/wp\/v2\/tags?post=901"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}